HL_7F5S_024

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7F5S|1|L5|U|1596, 7F5S|1|L5|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F5S_024 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.1115

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7F5S|1|L5|A|1593
7F5S|1|L5|C|1594
7F5S|1|L5|G|1595
7F5S|1|L5|U|1596
7F5S|1|L5|G|1597
7F5S|1|L5|C|1598
7F5S|1|L5|A|1599
7F5S|1|L5|A|1600
7F5S|1|L5|A|1601
7F5S|1|L5|U|1602

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37