HL_7F5S_066

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

7F5S|1|L5|U|4419, 7F5S|1|L5|A|4422

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F5S_066 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.4547

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7F5S|1|L5|C|4417
7F5S|1|L5|G|4418
7F5S|1|L5|U|4419
7F5S|1|L5|PSU|4420
7F5S|1|L5|C|4421
7F5S|1|L5|A|4422
7F5S|1|L5|PSU|4423
7F5S|1|L5|A|4424
7F5S|1|L5|G|4425

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain Lm

Ubiquitin-60S ribosomal protein L40