HL_7JQB_008

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQB_008 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1458

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7JQB|1|A|U|416
7JQB|1|A|C|417
7JQB|1|A|A|418
7JQB|1|A|G|419
7JQB|1|A|G|420
7JQB|1|A|G|421

Current chains

Chain A

rRNA

Nearby chains

Chain D

uS5

Chain K

uS4

Chain O

uS17

Chain Y

uS8

Chain c

Uncharacterized protein