HL_7JQB_019

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQB_019 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1139

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7JQB|1|A|A|957
7JQB|1|A|G|958
7JQB|1|A|G|959
7JQB|1|A|U|960
7JQB|1|A|G|961
7JQB|1|A|A|962
7JQB|1|A|A|963
7JQB|1|A|A|964
7JQB|1|A|U|965
7JQB|1|A|U|966

Current chains

Chain A

rRNA

Nearby chains

Chain G

uS7

Chain X

Uncharacterized protein