HL_7JQB_021

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQB_021 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.1662

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7JQB|1|A|G|1054
7JQB|1|A|A|1055
7JQB|1|A|U|1056
7JQB|1|A|C|1057
7JQB|1|A|A|1058
7JQB|1|A|G|1059
7JQB|1|A|A|1060
7JQB|1|A|U|1061
7JQB|1|A|A|1062
7JQB|1|A|C|1063
7JQB|1|A|C|1064

Current chains

Chain A

rRNA

Nearby chains

Chain X

Uncharacterized protein