HL_7JQB_032
3D structure
- PDB id
- 7JQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 7JQB|1|A|U|1621, 7JQB|1|A|U|1622, 7JQB|1|A|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7JQB_032 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.2227
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7JQB|1|A|A|1614
7JQB|1|A|U|1615
7JQB|1|A|U|1616
7JQB|1|A|G|1617
7JQB|1|A|C|1618
7JQB|1|A|A|1619
7JQB|1|A|A|1620
7JQB|1|A|U|1621
7JQB|1|A|U|1622
7JQB|1|A|A|1623
7JQB|1|A|U|1624
7JQB|1|A|U|1625
Current chains
- Chain A
- rRNA
Nearby chains
- Chain Q
- uS19
- Chain T
- uS13
Coloring options: