HL_7JQL_066

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7JQL|1|1A|G|2751, 7JQL|1|1A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQL_066 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0621

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

7JQL|1|1A|C|2745
7JQL|1|1A|U|2746
7JQL|1|1A|G|2747
7JQL|1|1A|A|2748
7JQL|1|1A|A|2749
7JQL|1|1A|A|2750
7JQL|1|1A|G|2751
7JQL|1|1A|C|2752
7JQL|1|1A|A|2753
7JQL|1|1A|U|2754
7JQL|1|1A|C|2755
7JQL|1|1A|U|2756
7JQL|1|1A|A|2757
7JQL|1|1A|A|2758
7JQL|1|1A|G|2759

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6

Chain 1N

50S ribosomal protein L13