HL_7JQL_104
3D structure
- PDB id
- 7JQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 7JQL|1|1x|C|16, 7JQL|1|1x|G|18, 7JQL|1|1x|G|19, 7JQL|1|1x|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7JQL_104 not in the Motif Atlas
- Homologous match to HL_5E81_211
- Geometric discrepancy: 0.1382
- The information below is about HL_5E81_211
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
7JQL|1|1x|C|13
7JQL|1|1x|A|14
7JQL|1|1x|G|15
7JQL|1|1x|C|16
7JQL|1|1x|C|17
7JQL|1|1x|U|17|||A
7JQL|1|1x|G|18
7JQL|1|1x|G|19
7JQL|1|1x|U|20
7JQL|1|1x|A|21
7JQL|1|1x|G|22
Current chains
- Chain 1x
- P-site tRNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- 50S ribosomal protein L5
Coloring options: