HL_7JQM_048
3D structure
- PDB id
- 7JQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.05 Å
Loop
- Sequence
- CG(PSU)AAC(5MU)A(PSU)AA(4OC)G
- Length
- 13 nucleotides
- Bulged bases
- 7JQM|1|1A|A|1913, 7JQM|1|1A|C|1914
- QA status
- Modified nucleotides: PSU, 5MU, 4OC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7JQM_048 not in the Motif Atlas
- Geometric match to HL_8P9A_160
- Geometric discrepancy: 0.3838
- The information below is about HL_8P9A_160
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_70658.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7JQM|1|1A|C|1909
7JQM|1|1A|G|1910
7JQM|1|1A|PSU|1911
7JQM|1|1A|A|1912
7JQM|1|1A|A|1913
7JQM|1|1A|C|1914
7JQM|1|1A|5MU|1915
7JQM|1|1A|A|1916
7JQM|1|1A|PSU|1917
7JQM|1|1A|A|1918
7JQM|1|1A|A|1919
7JQM|1|1A|4OC|1920
7JQM|1|1A|G|1921
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1v
- mRNA
- Chain 1x
- Transfer RNA; tRNA
Coloring options: