HL_7JSW_043

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSW_043 not in the Motif Atlas

Homologous match to HL_4WF9_042

Geometric discrepancy: 0.1339

The information below is about HL_4WF9_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

7JSW|1|1|C|1752
7JSW|1|1|G|1753
7JSW|1|1|A|1754
7JSW|1|1|A|1755
7JSW|1|1|G|1756

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L19