HL_7JSW_049

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

7JSW|1|1|A|2030, 7JSW|1|1|A|2031, 7JSW|1|1|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSW_049 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1632

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7JSW|1|1|G|2027
7JSW|1|1|U|2028
7JSW|1|1|G|2029
7JSW|1|1|A|2030
7JSW|1|1|A|2031
7JSW|1|1|G|2032
7JSW|1|1|A|2033
7JSW|1|1|U|2034
7JSW|1|1|G|2035
7JSW|1|1|C|2036

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain c

50S ribosomal protein L3

Chain r

50S ribosomal protein L21