HL_7JSW_053

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7JSW|1|1|A|2268, 7JSW|1|1|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSW_053 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1075

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7JSW|1|1|C|2264
7JSW|1|1|U|2265
7JSW|1|1|A|2266
7JSW|1|1|A|2267
7JSW|1|1|A|2268
7JSW|1|1|G|2269
7JSW|1|1|A|2270
7JSW|1|1|G|2271
7JSW|1|1|U|2272
7JSW|1|1|A|2273
7JSW|1|1|A|2274
7JSW|1|1|C|2275
7JSW|1|1|G|2276

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L16

Chain w

50S ribosomal protein L27