3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGUCGGACAUC
Length
11 nucleotides
Bulged bases
7JSW|1|1|A|2309
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7JSW_054 not in the Motif Atlas
Homologous match to HL_5J7L_188
Geometric discrepancy: 0.3035
The information below is about HL_5J7L_188
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_11805.4
Basepair signature
cWW-F-F-F-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

7JSW|1|1|G|2303
7JSW|1|1|G|2304
7JSW|1|1|U|2305
7JSW|1|1|C|2306
7JSW|1|1|G|2307
7JSW|1|1|G|2308
7JSW|1|1|A|2309
7JSW|1|1|C|2310
7JSW|1|1|A|2311
7JSW|1|1|U|2312
7JSW|1|1|C|2313

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain e
50S ribosomal protein L5

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2268 s