HL_7JSW_061

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSW_061 not in the Motif Atlas

Homologous match to HL_5J7L_195

Geometric discrepancy: 0.1968

The information below is about HL_5J7L_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7JSW|1|1|C|2551
7JSW|1|1|U|2552
7JSW|1|1|G|2553
7JSW|1|1|U|2554
7JSW|1|1|U|2555
7JSW|1|1|C|2556
7JSW|1|1|G|2557

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 8

Peptidyl-tRNA hydrolase ArfB