HL_7JSW_065

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7JSW|1|1|G|2751, 7JSW|1|1|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSW_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.161

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7JSW|1|1|C|2745
7JSW|1|1|U|2746
7JSW|1|1|G|2747
7JSW|1|1|A|2748
7JSW|1|1|A|2749
7JSW|1|1|A|2750
7JSW|1|1|G|2751
7JSW|1|1|C|2752
7JSW|1|1|A|2753
7JSW|1|1|U|2754
7JSW|1|1|C|2755
7JSW|1|1|U|2756
7JSW|1|1|A|2757
7JSW|1|1|A|2758
7JSW|1|1|G|2759

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain j

50S ribosomal protein L13