3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGUAACGGC
Length
9 nucleotides
Bulged bases
7JSW|1|3|G|266
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7JSW_076 not in the Motif Atlas
Homologous match to HL_5J7L_006
Geometric discrepancy: 0.1892
The information below is about HL_5J7L_006
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_84299.4
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
9

Unit IDs

7JSW|1|3|G|259
7JSW|1|3|G|260
7JSW|1|3|U|261
7JSW|1|3|A|262
7JSW|1|3|A|263
7JSW|1|3|C|264
7JSW|1|3|G|265
7JSW|1|3|G|266
7JSW|1|3|C|267

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain V
30S ribosomal protein S17
Chain Y
30S ribosomal protein S20

Coloring options:


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