3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CAGCCUGGUAG
Length
11 nucleotides
Bulged bases
7JSW|1|5|G|18
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7JSW_102 not in the Motif Atlas
Homologous match to HL_6UFM_001
Geometric discrepancy: 0.3013
The information below is about HL_6UFM_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_04642.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

7JSW|1|5|C|13
7JSW|1|5|A|14
7JSW|1|5|G|15
7JSW|1|5|C|16
7JSW|1|5|C|17
7JSW|1|5|U|17|||A
7JSW|1|5|G|18
7JSW|1|5|G|19
7JSW|1|5|U|20
7JSW|1|5|A|21
7JSW|1|5|G|22

Current chains

Chain 5
tRNAfMet

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain e
50S ribosomal protein L5

Coloring options:


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