3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UGGAAACG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7JSW_110 not in the Motif Atlas
Homologous match to HL_6CZR_215
Geometric discrepancy: 0.5294
The information below is about HL_6CZR_215
Detailed Annotation
GNRA with near cWW
Broad Annotation
GNRA with near cWW
Motif group
HL_82182.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
21

Unit IDs

7JSW|1|3|U|157
7JSW|1|3|G|158
7JSW|1|3|G|159
7JSW|1|3|A|160
7JSW|1|3|A|161
7JSW|1|3|A|162
7JSW|1|3|C|163
7JSW|1|3|G|164

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain Y
30S ribosomal protein S20
Chain p
50S ribosomal protein L19

Coloring options:


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