HL_7JT1_047
3D structure
- PDB id
- 7JT1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 7JT1|1|1|A|1913, 7JT1|1|1|C|1914
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7JT1_047 not in the Motif Atlas
- Homologous match to HL_9DFE_046
- Geometric discrepancy: 0.5904
- The information below is about HL_9DFE_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7JT1|1|1|G|1910
7JT1|1|1|U|1911
7JT1|1|1|A|1912
7JT1|1|1|A|1913
7JT1|1|1|C|1914
7JT1|1|1|U|1915
7JT1|1|1|A|1916
7JT1|1|1|U|1917
7JT1|1|1|A|1918
7JT1|1|1|A|1919
7JT1|1|1|C|1920
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- mRNA
- Chain 5
- Transfer RNA; tRNA
- Chain 8
- Peptidyl-tRNA hydrolase ArfB
- Chain 9
- Peptidyl-tRNA hydrolase ArfB
- Chain Q
- 30S ribosomal protein S12
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