3D structure

PDB id
7JT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UGUGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7JT3_030 not in the Motif Atlas
Homologous match to HL_5J7L_164
Geometric discrepancy: 0.1821
The information below is about HL_5J7L_164
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

7JT3|1|1|U|1222
7JT3|1|1|G|1223
7JT3|1|1|U|1224
7JT3|1|1|G|1225
7JT3|1|1|A|1226
7JT3|1|1|G|1227

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain l
50S ribosomal protein L15
Chain q
50S ribosomal protein L20
Chain r
50S ribosomal protein L21

Coloring options:


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