HL_7JT3_035

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

7JT3|1|1|A|1453, 7JT3|1|1|C|1454, 7JT3|1|1|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT3_035 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3846

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

7JT3|1|1|G|1450
7JT3|1|1|C|1451
7JT3|1|1|G|1452
7JT3|1|1|A|1453
7JT3|1|1|C|1454
7JT3|1|1|G|1455
7JT3|1|1|G|1456
7JT3|1|1|U|1457
7JT3|1|1|U|1458
7JT3|1|1|G|1459
7JT3|1|1|U|1460
7JT3|1|1|C|1461

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L17