HL_7JU1_005

3D structure

PDB id

7JU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The FARFAR-NMR Ensemble of 29-mer HIV-1 Trans-activation Response Element RNA (N=20)

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CCUGGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JU1_005 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2746

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7JU1|5|X|C|29
7JU1|5|X|C|30
7JU1|5|X|U|31
7JU1|5|X|G|32
7JU1|5|X|G|33
7JU1|5|X|G|34
7JU1|5|X|A|35
7JU1|5|X|G|36

Current chains

Chain X

RNA (29-MER)

Nearby chains