HL_7K50_088

3D structure

PDB id

7K50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation non-frameshifting(CCA-A) complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

7K50|1|3|C|841, 7K50|1|3|U|842, 7K50|1|3|U|843, 7K50|1|3|G|844, 7K50|1|3|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K50_088 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3509

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7K50|1|3|C|840
7K50|1|3|C|841
7K50|1|3|U|842
7K50|1|3|U|843
7K50|1|3|G|844
7K50|1|3|A|845
7K50|1|3|G|846

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain W

30S ribosomal protein S18