HL_7K55_035

3D structure

PDB id

7K55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

7K55|1|1|A|1453, 7K55|1|1|C|1454, 7K55|1|1|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K55_035 not in the Motif Atlas

Geometric match to HL_8VTW_008

Geometric discrepancy: 0.3394

The information below is about HL_8VTW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

7K55|1|1|G|1450
7K55|1|1|C|1451
7K55|1|1|G|1452
7K55|1|1|A|1453
7K55|1|1|C|1454
7K55|1|1|G|1455
7K55|1|1|G|1456
7K55|1|1|U|1457
7K55|1|1|U|1458
7K55|1|1|G|1459
7K55|1|1|U|1460
7K55|1|1|C|1461

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L17