HL_7K5I_017

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

7K5I|1|2|U|890

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K5I_017 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.4834

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7K5I|1|2|U|885
7K5I|1|2|A|886
7K5I|1|2|U|887
7K5I|1|2|U|888
7K5I|1|2|U|889
7K5I|1|2|U|890
7K5I|1|2|G|891
7K5I|1|2|U|892
7K5I|1|2|U|893
7K5I|1|2|G|894
7K5I|1|2|G|895
7K5I|1|2|U|896
7K5I|1|2|U|897
7K5I|1|2|U|898
7K5I|1|2|U|899
7K5I|1|2|C|900
7K5I|1|2|G|901

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains