HL_7K5I_024
3D structure
- PDB id
- 7K5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-COV-2 nsp1 in complex with human 40S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 7K5I|1|2|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7K5I_024 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.1645
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7K5I|1|2|G|1245
7K5I|1|2|A|1246
7K5I|1|2|C|1247
7K5I|1|2|U|1248
7K5I|1|2|C|1249
7K5I|1|2|A|1250
7K5I|1|2|A|1251
7K5I|1|2|C|1252
7K5I|1|2|A|1253
7K5I|1|2|C|1254
Current chains
- Chain 2
- 40S ribosomal rRNA18S
Nearby chains
- Chain Q
- 40S ribosomal protein S16
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29
- Chain f
- 40S ribosomal protein S27a
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