HL_7K5I_025

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7K5I|1|2|U|1300, 7K5I|1|2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K5I_025 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2812

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7K5I|1|2|A|1295
7K5I|1|2|U|1296
7K5I|1|2|U|1297
7K5I|1|2|G|1298
7K5I|1|2|A|1299
7K5I|1|2|U|1300
7K5I|1|2|A|1301
7K5I|1|2|G|1302
7K5I|1|2|C|1303
7K5I|1|2|U|1304

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain P

40S ribosomal protein S15

Chain d

40S ribosomal protein S29

Chain f

40S ribosomal protein S27a