HL_7KWG_015

3D structure

PDB id

7KWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7KWG_015 not in the Motif Atlas

Homologous match to HL_6CZR_086

Geometric discrepancy: 0.3538

The information below is about HL_6CZR_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

7KWG|1|a|C|697
7KWG|1|a|G|698
7KWG|1|a|G|699
7KWG|1|a|U|700
7KWG|1|a|G|701
7KWG|1|a|A|702
7KWG|1|a|A|703
7KWG|1|a|A|704
7KWG|1|a|U|705
7KWG|1|a|G|706

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

mRNA

Chain g

30S ribosomal protein S7

Chain k

30S ribosomal protein S11