HL_7KWG_023

3D structure

PDB id

7KWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

7KWG|1|a|G|1043

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7KWG_023 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2652

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7KWG|1|a|C|1038
7KWG|1|a|C|1039
7KWG|1|a|U|1040
7KWG|1|a|U|1041
7KWG|1|a|C|1042
7KWG|1|a|G|1043
7KWG|1|a|G|1044
7KWG|1|a|G|1045

Current chains

Chain a

16S ribosomal RNA

Nearby chains