HL_7LH5_200

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

7LH5|1|DA|C|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LH5_200 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.4641

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7LH5|1|DA|C|2471
7LH5|1|DA|G|2472
7LH5|1|DA|U|2473
7LH5|1|DA|C|2474
7LH5|1|DA|C|2475
7LH5|1|DA|A|2476
7LH5|1|DA|C|2477
7LH5|1|DA|A|2478
7LH5|1|DA|G|2479

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D9

50S ribosomal protein L36