HL_7LS1_021

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7LS1|1|A2|U|1409, 7LS1|1|A2|A|1413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_021 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.1281

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7LS1|1|A2|A|1406
7LS1|1|A2|C|1407
7LS1|1|A2|G|1408
7LS1|1|A2|U|1409
7LS1|1|A2|G|1410
7LS1|1|A2|C|1411
7LS1|1|A2|A|1412
7LS1|1|A2|A|1413
7LS1|1|A2|A|1414
7LS1|1|A2|U|1415

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L3

Chain J2

60S ribosomal protein L17

Chain d2

60S ribosomal protein L37