HL_7LS1_022

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7LS1|1|A2|A|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_022 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.145

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7LS1|1|A2|G|1440
7LS1|1|A2|C|1441
7LS1|1|A2|G|1442
7LS1|1|A2|A|1443
7LS1|1|A2|A|1444
7LS1|1|A2|A|1445
7LS1|1|A2|G|1446
7LS1|1|A2|A|1447
7LS1|1|A2|C|1448

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

60S ribosomal protein L8

Chain H1

60S ribosomal protein L15

Chain d2

60S ribosomal protein L37