HL_7LS1_029

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_029 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.5719

The information below is about HL_8C3A_028

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7LS1|1|A2|U|1808
7LS1|1|A2|G|1809
7LS1|1|A2|U|1810
7LS1|1|A2|A|1811
7LS1|1|A2|A|1812
7LS1|1|A2|C|1813
7LS1|1|A2|A|1814
7LS1|1|A2|A|1815

Current chains

Chain A2

28S rRNA

Nearby chains

Chain g2

Ubiquitin-60S ribosomal protein L40

Chain j

60S acidic ribosomal protein P0

Chain m

Elongation factor 2