HL_7LS1_053

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

7LS1|1|A2|U|3458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_053 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.2073

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7LS1|1|A2|U|3452
7LS1|1|A2|C|3453
7LS1|1|A2|U|3454
7LS1|1|A2|A|3455
7LS1|1|A2|A|3456
7LS1|1|A2|U|3457
7LS1|1|A2|U|3458
7LS1|1|A2|A|3459
7LS1|1|A2|G|3460

Current chains

Chain A2

28S rRNA

Nearby chains

Chain P2

60S ribosomal protein L23

Chain m2

Small subunit ribosomal RNA; SSU rRNA