HL_7LS1_106
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUUGAUAGCU
- Length
- 10 nucleotides
- Bulged bases
- 7LS1|1|m2|U|1302, 7LS1|1|m2|G|1304
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LS1_106 not in the Motif Atlas
- Homologous match to HL_4V88_213
- Geometric discrepancy: 0.2377
- The information below is about HL_4V88_213
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
7LS1|1|m2|A|1297
7LS1|1|m2|U|1298
7LS1|1|m2|U|1299
7LS1|1|m2|G|1300
7LS1|1|m2|A|1301
7LS1|1|m2|U|1302
7LS1|1|m2|A|1303
7LS1|1|m2|G|1304
7LS1|1|m2|C|1305
7LS1|1|m2|U|1306
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain H3
- 40S ribosomal protein S29
- Chain U3
- Ubiquitin-40S ribosomal protein S27a
- Chain x2
- 40S ribosomal protein S15
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