HL_7LS1_108

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

7LS1|1|m2|U|1373

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_108 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.2564

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7LS1|1|m2|G|1368
7LS1|1|m2|U|1369
7LS1|1|m2|U|1370
7LS1|1|m2|A|1371
7LS1|1|m2|A|1372
7LS1|1|m2|U|1373
7LS1|1|m2|U|1374
7LS1|1|m2|C|1375

Current chains

Chain m2

28S rRNA

Nearby chains

Chain z2

40S ribosomal protein S17