HL_7LS2_007

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGUGAG(B9B)C

Length

9 nucleotides

Bulged bases

7LS2|1|A2|G|232, 7LS2|1|A2|G|236

QA status

Modified nucleotides: B9B

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.3901

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7LS2|1|A2|G|230
7LS2|1|A2|U|231
7LS2|1|A2|G|232
7LS2|1|A2|U|233
7LS2|1|A2|G|234
7LS2|1|A2|A|235
7LS2|1|A2|G|236
7LS2|1|A2|B9B|237
7LS2|1|A2|C|238

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain F2

60S ribosomal protein L4

Chain S2

60S ribosomal protein L26