HL_7LS2_019
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUCUCCAGUCCG
- Length
- 13 nucleotides
- Bulged bases
- 7LS2|1|A2|C|1250, 7LS2|1|A2|U|1251, 7LS2|1|A2|C|1252
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LS2_019 not in the Motif Atlas
- Geometric match to HL_4PJO_001
- Geometric discrepancy: 0.3868
- The information below is about HL_4PJO_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67407.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
7LS2|1|A2|C|1249
7LS2|1|A2|C|1250
7LS2|1|A2|U|1251
7LS2|1|A2|C|1252
7LS2|1|A2|U|1253
7LS2|1|A2|C|1254
7LS2|1|A2|C|1255
7LS2|1|A2|A|1256
7LS2|1|A2|G|1257
7LS2|1|A2|U|1258
7LS2|1|A2|C|1259
7LS2|1|A2|C|1260
7LS2|1|A2|G|1261
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain A1
- 60S ribosomal protein L7
- Chain F2
- 60S ribosomal protein L4
- Chain K2
- 60S ribosomal protein L18
- Chain V2
- 60S ribosomal protein L29
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