HL_7LS2_020

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_020 not in the Motif Atlas

Geometric match to HL_1ZBH_001

Geometric discrepancy: 0.2168

The information below is about HL_1ZBH_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

7LS2|1|A2|C|1293
7LS2|1|A2|C|1294
7LS2|1|A2|G|1295
7LS2|1|A2|C|1296
7LS2|1|A2|G|1297

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F1

60S ribosomal protein L13

Chain c2

60S ribosomal protein L36