HL_7LS2_024

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

7LS2|1|A2|C|1489, 7LS2|1|A2|C|1491, 7LS2|1|A2|A|1492

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_024 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1607

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7LS2|1|A2|C|1488
7LS2|1|A2|C|1489
7LS2|1|A2|PSU|1490
7LS2|1|A2|C|1491
7LS2|1|A2|A|1492
7LS2|1|A2|G|1493

Current chains

Chain A2

28S rRNA

Nearby chains

Chain U2

60S ribosomal protein L27a

Chain V2

60S ribosomal protein L29

Chain i2

60S ribosomal protein L36a