HL_7LS2_062

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUCAG(OMU)ACG

Length

9 nucleotides

Bulged bases

7LS2|1|A2|A|3956

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_062 not in the Motif Atlas

Homologous match to HL_8C3A_059

Geometric discrepancy: 0.1934

The information below is about HL_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34636.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7LS2|1|A2|U|3953
7LS2|1|A2|U|3954
7LS2|1|A2|C|3955
7LS2|1|A2|A|3956
7LS2|1|A2|G|3957
7LS2|1|A2|OMU|3958
7LS2|1|A2|A|3959
7LS2|1|A2|C|3960
7LS2|1|A2|G|3961

Current chains

Chain A2

28S rRNA

Nearby chains

Chain K2

60S ribosomal protein L18

Chain N2

60S ribosomal protein L21

Chain U2

60S ribosomal protein L27a

Chain i2

60S ribosomal protein L36a