HL_7LS2_065

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_065 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1861

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7LS2|1|A2|C|4069
7LS2|1|A2|G|4070
7LS2|1|A2|U|4071
7LS2|1|A2|U|4072
7LS2|1|A2|C|4073
7LS2|1|A2|A|4074
7LS2|1|A2|U|4075
7LS2|1|A2|A|4076
7LS2|1|A2|G|4077

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D1

60S ribosomal protein L10-like

Chain g2

Ubiquitin-60S ribosomal protein L40

Chain m

Elongation factor 2