HL_7LS2_070

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_070 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1797

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7LS2|1|A2|U|4298
7LS2|1|A2|G|4299
7LS2|1|A2|A|4300
7LS2|1|A2|G|4301
7LS2|1|A2|G|4302
7LS2|1|A2|A|4303

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L2

60S ribosomal protein L19

Chain O2

60S ribosomal protein L22

Chain X2

60S ribosomal protein L31