HL_7LS2_084

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7LS2|1|m2|U|160, 7LS2|1|m2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_084 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.3958

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7LS2|1|m2|G|156
7LS2|1|m2|U|157
7LS2|1|m2|A|158
7LS2|1|m2|A|159
7LS2|1|m2|U|160
7LS2|1|m2|U|161
7LS2|1|m2|C|162

Current chains

Chain m2

18S rRNA

Nearby chains

Chain K3

40S ribosomal protein S6

Chain Q3

40S ribosomal protein S24