HL_7LS2_088

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

7LS2|1|m2|G|387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_088 not in the Motif Atlas

Geometric match to HL_6UFM_001

Geometric discrepancy: 0.239

The information below is about HL_6UFM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7LS2|1|m2|G|379
7LS2|1|m2|U|380
7LS2|1|m2|C|381
7LS2|1|m2|G|382
7LS2|1|m2|C|383
7LS2|1|m2|C|384
7LS2|1|m2|G|385
7LS2|1|m2|U|386
7LS2|1|m2|G|387
7LS2|1|m2|C|388
7LS2|1|m2|C|389

Current chains

Chain m2

18S rRNA

Nearby chains

Chain u

40S ribosomal protein S8

Chain w2

40S ribosomal protein S11