HL_7LS2_090
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 7LS2|1|m2|A|450, 7LS2|1|m2|C|452, 7LS2|1|m2|G|453
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LS2_090 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.1577
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7LS2|1|m2|C|443
7LS2|1|m2|C|444
7LS2|1|m2|U|445
7LS2|1|m2|G|446
7LS2|1|m2|A|447
7LS2|1|m2|G|448
7LS2|1|m2|A|449
7LS2|1|m2|A|450
7LS2|1|m2|A|451
7LS2|1|m2|C|452
7LS2|1|m2|G|453
7LS2|1|m2|G|454
Current chains
- Chain m2
- 18S rRNA
Nearby chains
- Chain K3
- 40S ribosomal protein S6
- Chain Q3
- 40S ribosomal protein S24
- Chain r2
- 40S ribosomal protein S4, X isoform
- Chain u
- 40S ribosomal protein S8
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