HL_7LS2_092

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

7LS2|1|m2|A|502, 7LS2|1|m2|C|504, 7LS2|1|m2|C|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_092 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.5587

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7LS2|1|m2|C|500
7LS2|1|m2|G|501
7LS2|1|m2|A|502
7LS2|1|m2|C|503
7LS2|1|m2|C|504
7LS2|1|m2|C|505
7LS2|1|m2|G|506

Current chains

Chain m2

18S rRNA

Nearby chains

Chain Q3

40S ribosomal protein S24

Chain r2

40S ribosomal protein S4, X isoform