HL_7LS2_098

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

7LS2|1|m2|G|838, 7LS2|1|m2|A|839, 7LS2|1|m2|G|840, 7LS2|1|m2|C|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_098 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3795

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7LS2|1|m2|C|835
7LS2|1|m2|C|836
7LS2|1|m2|C|837
7LS2|1|m2|G|838
7LS2|1|m2|A|839
7LS2|1|m2|G|840
7LS2|1|m2|C|841
7LS2|1|m2|C|842
7LS2|1|m2|G|843

Current chains

Chain m2

18S rRNA

Nearby chains

Chain Q3

40S ribosomal protein S24

Chain r2

40S ribosomal protein S4, X isoform