HL_7LS2_100

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_100 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.3365

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7LS2|1|m2|A|959
7LS2|1|m2|G|960
7LS2|1|m2|G|961
7LS2|1|m2|U|962
7LS2|1|m2|G|963
7LS2|1|m2|A|964
7LS2|1|m2|A|965
7LS2|1|m2|A|966
7LS2|1|m2|U|967
7LS2|1|m2|U|968

Current chains

Chain m2

18S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain F3

40S ribosomal protein S26

Chain O3

40S ribosomal protein S14