HL_7LS2_104

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_104 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.2613

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7LS2|1|m2|G|1143
7LS2|1|m2|G|1144
7LS2|1|m2|A|1145
7LS2|1|m2|A|1146
7LS2|1|m2|A|1147
7LS2|1|m2|C|1148
7LS2|1|m2|C|1149

Current chains

Chain m2

18S rRNA

Nearby chains

Chain F3

40S ribosomal protein S26

Chain J3

40S ribosomal protein S2

Chain P3

40S ribosomal protein S15a